TCarp is a data resource of GlycoNAVI, which analyzes data from the Protein Data Bank and contains the results of the analysis of the three-dimensional structure of carbohydrates and proteins.

TCarp Text Search

Example of a query string: 1AX1, P00735, Haptoglobin, Galectin
Query:
TCarp Text Search is a text search for proteins using strings such as Title, Descriptor, PDB ID, Uniprot ID, and common name.

Glycan Structure Search

SugarDrawer: Sugar Structure Drawing Tool

Carbohydrates
Draw and Search for a glycan structure using SugarDrawer.

Glycan Common Name Search

Carbohydrates
Common Name Search is a search that utilizes trivial names, synonyms, abbreviations and other carbohydrate names based on CAN resource of GlycoNAVI.

Motif Search

motif
Motif Search is a search that utilizes glycan motif structures. This motif information are based on Edwards's group.

Table for each Structural Category

Carbohydrates

Carbohydrates
Table of carbohydrates structures in the Protein Data Bank

Proteins

Proteins, PDB:3AP5
Table of proteins containing carbohydrate in the Protein Data Bank

Glycoproteins

Glycoproteins, PDB:1AX0
Table of glycoproteins containing carbohydrate in the Protein Data Bank

Lectins

Lectins, PDB:1ENM
Table of lectins containing carbohydrate in the Protein Data Bank

Statistics

Statistics related to glycans in the Protein Data Bank
   Glycan Statistics Analyzed Glycans: 76790 Unique Analyzed Glycans: 2730 N-Glycans(Asn): 44889 O-Glycans(Ser): 742 O-Glycans(Thr): 841 C-Glycans: 0
Statistics on glycan-containing proteins in the Protein Data Bank
   Protein Statistics PDB entries: 15125 Glycoproteins: 5878 Lectins: 714 Strand: 49579 Proteins: 49055

Statistics of protein structures around carbohydrates in the Protein Data Bank

Helix structures of proteins around glycan structures
GlycoNAVI - TCarp
Helix_Type Description Residue Count
Sheet structures of proteins around glycan structures
GlycoNAVI - TCarp
Sheet Residue Count



Statistics of the sequon

Sequences of N-Glycan sequons

Statistics of amino acid residues

Statistics of residues around glycans in the Protein Data Bank

Statistics of the paired structure of glycans and amino acid residues

Statistics of the paired structure of glycans and amino acid residues around carbohydrates in the Protein Data Bank

Statistics of the experimental methods

Glyco-Database Information Retrieval